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CHAPTER 10 - Bacteria and Water Quality Impacts 149
CHAPTER 10 – BACTERIA AND WATER QUALITY IMPACTS
Recreational waters, particularly coastal areas, are valued worldwide for their economic,
ecological and cultural significance. Like many states, the livelihood of North Carolina
communities that cater to water related activities can be severely impacted if bacteria levels are
above the water quality standards because the high levels often result in closed swimming areas
and/or restricted and even prohibited shellfish harvesting. This chapter reviews how bacteria is
used as a water quality indicator. It includes how bacteria can impact water quality, provides an
overview of water quality standards for freshwater and saltwater and reviews best management
practices (BMPs) and management strategies that can reduce bacteria numbers in waterbodies
throughout the state.
10.1 IDENTIFYING BACTERIA AND ITS SOURCE
Microbes are defined as any microscopic organism and include
protozoa (single-celled organisms), viruses and bacteria. Most
microbes are beneficial or harmless to human health, but some are
pathogenic and can cause a variety of human illnesses (NCNERR, no
date). In North Carolina, fecal coliform and enterococci serve as
bacterial indicators of water quality. Increased levels in aquatic
environments provide a warning of sewage treatment failure, a break
in the integrity of a water distribution system or possible
contamination with other disease causing pathogens.
Sources of Bacteria in
Surface Waters
Urban stormwater
Animals including
wildlife, livestock and
domesticated pets
Improperly designed
or managed animal waste
facilities
No matter what the bacteria or microorganism type (i.e., virus,
protozoan parasites), point and nonpoint source pollution contribute to
the bacterial numbers in waterbodies. Point source pollution includes
municipal wastewater treatment plants, sewage spills and permitted
discharges. Nonpoint source pollution includes agricultural runoff,
animal waste, human waste, leaky sewer lines, on-site septic systems,
straight pipes, stormwater runoff from developed land including roads,
buildings and residential yards and surface or land application of human and/or animal waste.
Identifying possible sources of microbes is the first step in developing strategies to reduce their
numbers in recreational waters.
Livestock with
direct, easy access to
streams
Improperly treated
discharges of domestic
wastewater including
leaking or failing septic
systems and straight
pipes
Marinas
10.1.1 FECAL COLIFORM BACTERIA
Fecal coliform bacteria are a group of bacteria that are passed through the fecal excrement of
humans, livestock and wildlife. The bacteria can be found in the digestive tract of warm-blooded
animals and aid in the digestion of food. In themselves, fecal coliform bacteria do not pose a
danger to people or animals; however, where fecal coliform are present, disease-causing bacteria
may also be present. Fecal coliform contamination often indicates that water is polluted with
human or animal waste, which can harbor other pathogens that may threaten human health.
Under favorable conditions (i.e., warm, dark, moist, organic-rich environment), fecal coliform
bacteria can survive in bottom sediments for an extended period of time (Howell et al., 1996;
Sherer et al., 1992; Schillinger and Gannon, 1985; Center for Watershed Protection, 1999).
CHAPTER 10 - Bacteria and Water Quality Impacts 150
Consequently, the concentration of bacteria measured in a water column can reflect both recent
inputs as well as the re-suspension of older inputs. In North Carolina, fecal coliform bacteria are
used to assess the water quality of fresh surface water (Class B and C) and saltwaters used for
shellfish harvesting (Class SA).
Reducing fecal coliform bacteria in wastewater requires a disinfection process, which typically
involves the use of chlorine and other disinfectants. Although these materials may kill the fecal
coliform bacteria and other disease-causing microbes, the disinfectants also kill other microbes
that are essential to the aquatic environment. This often endangers the survival of species
dependent on these other microbes.
10.1.2 ENTEROCOCCI BACTERIA
Like fecal coliform bacteria, enterococci are passed through the fecal excrement of humans,
livestock and wildlife. The bacteria can be found in the digestive tract of warm-blooded animals
and aid in the digestion of food. EPA approves the use of enterococci as an indicator of water
quality in recreation bathing waters. In North Carolina, enterococci bacteria are used to assess
surface saltwaters used for recreational purposes (Class SA, SB and SC).
10.1.3 HUMAN SOURCES OF BACTERIA
Not all sanitary sewer systems offer high levels of pollution reduction. Potential pathways for
human sewage to enter surface water include combined sewer overflows, sanitary sewer
overflows, illegal sanitary connections to storm drains, transient or inadvertent dumping and
failing septic systems (Center for Watershed Protection, 1999).
In the United States, there are nearly 800 cities with combined sewer systems (EPA, July 2006b).
Combined sewer systems can be found in many older cities and are designed to collect human
sewage, industrial wastewater and stormwater in the same pipe. Most of the time, all three can
be transported to a wastewater treatment plant where it is treated and discharged to surface
water; however, overflows can occur during heavy rain events. The overflow from the combined
sewer system (CSO) contains stormwater and untreated human and industrial waste, toxic
materials and debris. No combined sewer systems are located in North Carolina (EPA, July
2006b).
Even when stormwater and wastewater are separated, sanitary sewer overflows (SSO) can also
occur. SSOs are discharges of raw sewage from municipal sanitary sewer systems. They are
often caused by blockages and/or breaks in sewer lines, power failures at pumping stations
and/or when infiltration and inflow exceed the capacity of the wastewater treatment plant (Center
for Watershed Protection, 1999). By leaving sewer lines, entering basements and pooling on city
streets, SSOs can create a serious human health hazard (EPA, July 2006c). Many SSOs occur
during storm events because stormwater enters leaking, or broken, sewer pipes (Center for
Watershed Protection, 1999). Often referred to as urban wet weather flows (WWFs), CSO, SSO
and stormwater can discharge treated and untreated waste directly to surface water. These
discharges consist of point and diffuse nonpoint source pollution and often include high levels of
CHAPTER 10 - Bacteria and Water Quality Impacts 151
bacteria. More information on CSOs and SSOs can be found on the EPA’s NPDES Web site
(http://cfpub.epa.gov/npdes/).
Because it is difficult to identify sewer versus stormwater pipes during construction activities,
hundreds of improper connections to stormwater pipes can introduce human sewage to surface
water. Commonly referred to as illicit connections, they can have a significant impact on
bacterial counts in surface water (Center for Watershed Protection, 1999).
Illegal dumping of sewage from septage vacuum trucks, garbage trucks, recreational vehicles and
portable toilets along with livestock carriers can also contribute to bacterial loads; however, it is
difficult to quantify how much each of these may be contributing to surface waters. Failing
septic systems and straight pipes are also considered illegal because of their potential impact to
water quality. Septic systems must be properly located, installed and maintained if they are to
effectively remove bacteria from human waste (Center for Watershed Protection, 1999). More
information about on-site waste management can be found in Section 10.3.3 and 10.4.3
10.1.4 NON-HUMAN SOURCES OF BACTERIA
Most of the bacteria present in stormwater runoff is generally assumed to be from non-human
sources. Dogs, cats, raccoons, rats, beaver, gulls, geese, pigeons and even insects influence
bacterial numbers in many urban and rural watersheds. Given their population density, daily
defecation rate and pathogen infection rate, dogs and cats appear to be a major source of fecal
coliform bacteria in urban watersheds. The excrement of dogs and cats also contains other
microbes including Giardia and Salmonella, both of which can cause serious stomach ailments
in humans (Center for Watershed Protection, 1999).
Table 10-1 Numbers of Viable Bacteria
Found Per Gram of Feces of Adult Animals
(Median values from 10 animals) (NCNERR,
Fall 2003)
In highly urban areas, rats and pigeons can be a
major source of bacteria, and in many suburban
watersheds, raccoons live underground in stormwater
pipes and use ledges in the storm drain inlets for
shelter. Thus allowing easy transport of excrement
and bacteria to the closest waterbody. Many
researchers also believe that geese, gulls and ducks
may be a major bacterial source in urban areas. More
research needs to be conducted to confirm bacterial
impacts from geese, gulls and ducks, but it is
generally speculated that bacteria numbers will be
highest in small impoundments and concrete storage
reservoirs used for stormwater storage and/or
treatment (Center for Watershed Protection, 1999).
Animal E. coli Enterococci
Cow 20,000 200,000
Horse 13,000 6,300,000
Pig 3,200,000 2,500,000
Sheep 3,200,000 1,300,000
Chicken 4,000,000 32,000,000
Dog 32,000,000 40,000,000
Cat 40,000,000 200,000,000
Human 5,000,000 160,000
If feedlots and pastures are not managed properly, livestock (i.e., cattle, horses, sheep, pigs,
chickens, turkeys) can also have a significant impact on bacterial numbers (Table 10-1).
Improperly designed or managed animal feedlots and/or animal waste operations not only
increase bacterial numbers but also introduce sediment, nutrients and oxygen-consuming
organics to the stream (EPA, March 2005). Livestock in streams and stormwater runoff from
CHAPTER 10 - Bacteria and Water Quality Impacts 152
pasturelands are also potential sources for fecal coliform bacteria. Limiting direct, easy access to
streams can dramatically reduce impacts from bacteria, and several rules and regulations are in
place to properly deal with animal waste issues (Chapter 6).
10.2 IMPACTS ON WATER QUALITY AND HUMAN HEALTH
10.2.1 ENVIRONMENTAL IMPACTS
From a human perspective, bacteria often impacts the recreational
use of a waterbody making an area undesirable for swimming,
wading and even fishing. From a biological perspective, the mode
of bacterial transport – sediment, organic material (i.e., excrement)
and stormwater runoff – can impact aquatic habitat, erode
streambanks and impact watershed function. Aerobic
decomposition of the organic material can reduce dissolved oxygen
levels. If the dissolved oxygen level is too low, it can kill aquatic
organisms.
Variables that Influence
Movement and Transport of
Indicator Bacteria
Water discharge rates
(or instream flow)
Storm events
Land disturbances
Proximity to surface
water
Wastewater treatment methods can indirectly impact an aquatic
ecosystem as well. Reduction of fecal coliform bacteria in
wastewater may require the use of chlorine or other disinfectant
chemicals. Such material may kill the disease-causing bacteria,
but these same bacteria may be essential to maintaining the aquatic
ecosystem, endangering species that may be dependent on the bacteria for its survival.
Land use – urban,
forest, agriculture, septic
tanks
Runoff volume and rate
– impervious surface cover,
type of vegetation, BMPs
10.2.2 HUMAN HEALTH HAZARDS
Large quantities of fecal coliform bacteria in water may indicate a higher risk of pathogens being
present. Some of the waterborne pathogenic diseases include ear infections, typhoid fever, viral
and bacterial gastroenteritis, cholera and hepatitis A. Like many other bacteria, fecal coliform
can usually be killed by boiling water or by treating the water with chlorine. Thoroughly
washing with soap after contact with contaminated water will also help prevent infections.
Throughout the United States, municipalities that maintain public water supplies are required to
monitor and kill harmful microorganisms before water is distributed for public consumption.
10.3 WATER QUALITY STANDARDS AND COASTAL STORMWATER REGULATIONS
Microbial or bacterial contamination is addressed through the Safe Drinking Water Act (SDWA)
and the Clean Water Act. The SDWA enables regulation of contamination of finished drinking
water and protection of source waters while the Clean Water Act enables protection of surface
water for drinking, recreation and as an aquatic food source. Programs under the two Acts have
historically followed separate paths using differing indicators of contamination and different
approaches; however, concerns about future increases in microbial contamination and potential
for emergence of new threats, such as endocrine disrupting chemicals, create a need to consider a
strategy for the future that unites the influence of the two programs. Objectives of the strategy
CHAPTER 10 - Bacteria and Water Quality Impacts 153
are to address all-important sources of contamination, anticipate emerging problems and use
program and research activities efficiently to protect public health (EPA, July 2006a).
Throughout the nation, water quality standards for bacteria are based on human health for
recreation and shellfish harvesting and consumption (15A NCAC 2B .0200). North Carolina
evaluates waters for the support of primary recreation activities such as swimming, water-skiing,
skin diving and similar uses involving human body contact with water where such activities take
place in an organized manner or on a frequent basis. Waters of the state designated for these
uses are classified as Class B, SB and SA.
North Carolina also evaluates waters used for secondary recreation activities such as wading,
boating and other uses not involving human body contact with water where such activities take
place on an infrequent, unorganized or incidental basis. These waters are classified as Class C,
SC and WS. Table 10-2 identifies the major responsibilities of various DENR agencies in
regulating recreational and shellfish waters.
Table 10-2 Microbial Related Activities and Responsible DENR Agency (adapted from
NCNEER, Technical Paper – Addressing Microbial Pollution in Coastal Waters)
Microbial/Monitoring Activity Responsible Agency
Microbial water quality monitoring for fresh and
estuarine waters DWQ Environmental Sciences Section (ESS)
Microbial water quality monitoring of estuarine
and ocean waters for recreational beaches
DEH Shellfish Sanitation & Recreational
Water Quality Section
DEH Shellfish Sanitation & Recreational
Water Quality Section Shoreline Surveys of shellfish growing areas
Regulating shellfish harvesting Division of Marine Fisheries (DMF)
Recommending and tracking shellfish growing
area closures
DEH Shellfish Sanitation & Recreational
Water Quality Section
Assessing lose of use of swimming waters and
shellfish harvesting DWQ Planning Section
Developing total maximum daily loads
(TMDLs) DWQ Planning Section
DEH Shellfish Sanitation & Recreational
Water Quality Section Posting swimming advisories
10.3.1 RECREATIONAL WATER QUALITY STANDARDS
DWQ conducts monthly ambient water quality monitoring that includes fecal coliform bacteria
testing. In addition to DWQ ambient monitoring, the DEH tests coastal recreational waters (i.e.,
beaches, sounds, bays) for bacteria levels to assess the relative safety of these waters for
swimming. If an area has elevated bacteria levels, health officials will advise people not swim in
the area by posting a swimming advisory and by notifying the local media and county health
department.
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The fecal coliform standard for freshwater is 200 colonies per 100 milliliters (ml) of water based
on at least five consecutive samples taken during a 30-day period, not to exceed 400 colonies per
100ml in more than 20 percent of the samples during the same period (15A NCAC 2B .0219).
The 200 colonies per 100ml standard is intended to ensure that waters are safe enough for water
contact through recreation. Class B waters are impaired in the recreation category if the water
quality standard for fecal coliform bacteria is exceeded. Fecal coliform bacteria are identified as
the stressor to these waters. Class C and WS waters are not rated if the geometric mean exceeds
400 colonies per 100 ml.
Coastal recreational waters are monitored through the DEH Recreational Water Quality
Monitoring Program
(http://www.deh.enr.state.nc.us/shellfish/Water_Monitoring/RWQweb/home.htm). Water
quality objectives and criteria have been established with the main goal of protecting public
health. By evaluating and monitoring the quality of North Carolina’s coastal recreational waters,
DEH can notify the public when bacteriological standards for safe bodily contact are exceeded.
Specific objectives of DEH are to:
Identify swimming areas/beaches and classify them based on human recreational usage.
Identify monitoring stations that exceed the enterococci geometric mean and single-
sample maximum criteria using the Enterolert Most Probable Number (MPN) method for
enumeration.
Evaluate the public health significance of approximately twenty (20) ocean stormwater
outfalls/drains.
Document trends in coastal bacteriological water quality.
DEH has established Tier I, II and III swimming areas/beaches based on their recreational usage.
Swimming advisory signs are posted and press releases issued for Tier I swimming areas or
beaches (swimming areas used daily) when a minimum of five samples, equally spaced over 30
days, exceed a geometric mean of 35 enterococci per 100 ml or when a single sample exceeds
500 enterococci per 100 ml. The public is notified only by press release, without an advisory
sign, when a single sample exceeds 104 enterococci per 100 ml and is less than 500 enterococci
per 100 ml. If a second sample exceeds 104 enterococci per 100 ml, an advisory is posted and
the public will be notified by press release. An advisory will also be issued when at least two of
three samples from a monitoring site exceed 104 enterococci per 100 ml. For an advisory to be
rescinded, the station must have two consecutive samples below 35 enterococci per 100 ml.
In cases where a station under advisory is subject to triplicate sampling, two of the three samples
must be under the single-sample maximum of 104 enterococci per 100 ml. If two of the three
samples are above the single-sample maximum of 104 enterococci per 100 ml, an advisory will
be put into place. The advisory will be rescinded when two of the three re-samples are under the
single-sample level, as long as the running geometric mean of 35 enterococci per 100 ml has not
been exceeded.
Beaches that violate the single-sample maximum criteria are re-sampled at the time of the public
notification and/or sign posting, depending on the level of the exceedence. If the re-sample is
satisfactory, the advisory may be lifted as early as 24 hours from the time of the initial advisory
notification or posting. If the re-sample is unsatisfactory, but the geometric mean is not
CHAPTER 10 - Bacteria and Water Quality Impacts 155
exceeded, the sign remains posted. If the re-sampling causes the exceedence of the geometric
mean, then the geometric mean criteria apply.
The timeframe for posting swimming advisory signs at Tier I beaches, based on the enterococci
geometric mean, runs from the beginning of May through the end of September. Weekly
sampling of Tier I beaches is from April to October. During April and October, advisories at all
Tier I monitoring sites are based on the single-sample maximum for Tier II beaches/swimming
areas (276 enterococci per 100 ml.).
Tier II and Tier III beaches/swimming areas are sampled twice monthly from April to October,
with the advisories based entirely on the single sample maximum criteria. For Tier II sites (areas
are used infrequently and usually by watercraft), public notification and a swimming advisory
sign are posted when a single sample exceeds 500 enterococci per 100 ml. A public notification
without the advisory sign occurs when a single sample exceeds 276 enterococci per 100 ml but is
less than 500 enterococci per 100 ml. If a second sample exceeds 276 enterococci per 100 ml, an
advisory is posted and the public is notified. Weekly sampling of the site continues until the
enterococci counts are less than 276 enterococci per 100 ml.
Because of infrequent use, Tier III swimming areas/beaches do not receive public notification or
advisory signs until the second sample exceeds 500 enterococci per 100 ml. If the second
sample exceeds 500 enterococci per 100 ml, an advisory sign and public notification are issued.
Weekly sampling of the site will continue until the enterococci counts are less than 500
enterococci per 100 ml.
Other swimming advisories will be posted as precautionary measures when the following
activities occur:
Pumping of floodwaters between the primary dune and the ocean beaches.
Stormwater outfalls/drains discharge onto ocean beaches. Storm drains that have flow
that may be able to reach ocean recreational waters are posted with advisory signs.
Disposal of dredge material from closed shellfishing waters on ocean beaches.
These swimming advisories are rescinded 24 hours after visible discharge into the ocean ceases.
Swimming advisories are not posted from November through March; however, all sampling
stations are sampled once per month during the non-swimming season.
DWQ does not directly use enterococci data from the DEH Recreational Water Quality
Monitoring Program to assign use support ratings. The use support ratings applied to the
recreation category are currently based on the state’s fecal coliform bacteria water quality
standard where ambient monitoring data are available or on the duration of local or state health
agencies posted swimming advisories. The advisories are based on the state’s enterococcus
bacteria standards. Waters are impaired for recreation when swimming advisories are posted for
more than 61 days during a five-year assessment period. Enterococci bacteria are identified as
the stressor in these waters.
CHAPTER 10 - Bacteria and Water Quality Impacts 156
10.3.2 SHELLFISH HARVESTING WATER QUALITY STANDARDS
The Shellfish Sanitation Section of DEH is responsible for monitoring and classifying coastal
waters as to their suitability for shellfish harvesting for human consumption and the inspection
and certification of shellfish and crustacean processing plants. Classifications of coastal waters
for shellfish harvesting are done by means of a Sanitary Survey, which includes: a shoreline
survey, a hydrographic survey and a bacteriological survey of growing waters. The shoreline
survey identifies potential pollution sources. The hydrographic survey evaluates meteorological
and hydrographic features of the area that may affect the distribution of pollutants. The
bacteriological survey assesses water quality using bacteria as water quality indicators. Sanitary
Surveys are conducted of all potential shellfish growing areas in coastal North Carolina and
recommendations are made to the DMF of which areas should be closed for shellfish harvesting.
Based on the results of the survey, waters are classified into one of five categories (Table 10-3).
DEH follows guidelines set by the Interstate Shellfish Sanitation Conference (ISSC)
(http://www.issc.org/) contained in the National Shellfish Sanitation Program (NSSP) Guide for
the Control of Molluscan Shellfish Model Ordinance. The U.S. Food and Drug Administration
(FDA) administer the NSSP.
DWQ assesses use support for the shellfish-harvesting category based on the DEH growing area
classification. By definition, conditionally approved-open (CAO) growing areas are areas that
DEH has determined do not meet water quality standards; however, the pollutant event is known
and predictable and can by managed by a plan. DWQ identifies these waters as impaired for
shellfish harvesting. Conditionally approved-closed (CAC), restricted (RES) and prohibited
(PRO) growing areas are also considered impaired for shellfish harvesting. Fecal coliform
bacteria are identified as the stressor.
DWQ, DEH, Division of Coastal Management (DMC) (http://dcm2.enr.state.nc.us/) and DMF
are engaged in developing a database with georeferenced (GIS) shellfish harvesting areas. The
new database and GIS tools will be valuable for the several DENR agencies and local health
departments to continue to work together to better serve the public. Using the new database with
georeferenced areas and monitoring sites, DEH will be able to report the number of days each
area is closed excluding closures related to large or named storms events.
10.3.3 ON-SITE WASTEWATER TREATMENT
The On-Site Wastewater Section (OSWS)
(http://www.deh.enr.state.nc.us/osww_new//index.htm) of DEH writes, oversees and enforces
the rules and laws regulating the design, installation, repair, operation and maintenance of on-site
wastewater treatment systems for the protection of human and environmental health from
microbial contamination. OSWS provides statewide regulatory and consultative services to local
health departments and numerous other clients, including builders, developers, land- and
homeowners, system installers, system operators, engineers, soil scientists, geologists and
environmental health consultants. However, an authorized environmental health specialist in
each county health department conducts the actual implementation of the regulations (i.e., site
evaluation, permitting of new systems).
CHAPTER 10 - Bacteria and Water Quality Impacts 157
Table 10-3 Shellfish Growing Area Classifications and Criteria
DEH
CLASSIFICATION DEFINITIONS AND WATER QUALITY CRITERIA
Approved
(APP)
DEFINITION: These areas are always open to shellfish harvesting and close only after rare, heavy
rainfall events such as hurricanes.
CRITERIA: The median fecal coliform Most Probable Number (MPN) or the geometric mean MPN of
the water shall not exceed 14 per 100 milliliters (ml), and the estimated 90th percentile shall not
exceed an MPN of 43 MPN per 100 ml for a 5-tube decimal dilution test. Under sampling for
adverse pollution conditions, the median fecal coliform or geometric mean MPN of the water shall
not exceed 14 per 100 ml, and not more than 10 percent of the samples shall exceed 43 MPN per
100 ml for a 5-tube decimal dilution test.
Conditionally
Approved-Open
(CAO)
DEFINITION: CAO areas permit shellfish harvesting when environmental conditions result in fecal
coliform bacteria levels lower than the state standard in areas that otherwise might be closed for
harvesting. These areas are open to harvesting much of the year but are closed immediately after
certain rainfall events. There are concerns that these areas may be closed more often and stay closed
for longer periods as development proceeds in coastal areas adjacent to Class SA waters.
CRITERIA: Sanitary Survey indicates an area can meet approved area criteria for a reasonable period
of time, and the pollutant event is known and predictable and can be managed by a plan. These
areas tend to be open more frequently than closed.
DEFINITION: CAC areas permit shellfish harvesting when environmental conditions result in fecal
coliform bacteria levels lower than state standards in areas that are typically closed to shellfish
harvesting. These areas are monitored regularly to determine if temporary openings are possible.
These waters are rarely open to shellfish harvesting.
Conditionally
Approved-Closed
(CAC) CRITERIA: Sanitary Survey indicates an area can meet approved area criteria for a reasonable period
of time, and the pollutant event is known and predictable and can be managed by a plan. These areas
tend to be closed more frequently than open.
DEFINITION: Most of the RES and PRO areas receive runoff that consistently results in fecal
coliform bacteria levels above the state standard. In many areas, contamination (fecal coliform
bacteria) may be from several different sources at different times of year. Restricted
(RES) CRITERIA: Sanitary Survey indicates limited degree of pollution, and the area is not contaminated to
the extent that consumption of shellfish could be hazardous after controlled depuration or relaying.
Prohibited
(PRO)
CRITERIA: Sanitary Survey is not routinely conducted; area is closed due to regulations related to the
presence of point source discharges or marinas; or previous sampling data did not meet criteria for
APP, CAO, CAC or RES classification.
All of the rules and regulations including horizontal setbacks, depth to groundwater, soils
requirements, loading rates, etc., are specific to North Carolina and are based on scientific
studies of microbial fate and transport. These rules are constructed to protect groundwater and
surface water from microbial contamination as well as other contaminants. The onsite treatment
regulations are devised to minimize migration of microbes and pathogens to groundwater and
surface water. More information related to on-site waste management can be found on the DEH
OSWS Web site (http://www.deh.enr.state.nc.us/osww_new//index.htm).
10.3.4 COASTAL STORMWATER REGULATIONS
North Carolina’s current stormwater regulatory programs for coastal areas were adopted in the
late 1980’s as three primary coastal programs:
Coastal (State) Stormwater Program.
Shellfishing (Class SA) Waters Program.
Outstanding Resource Waters (ORW) Program.
CHAPTER 10 - Bacteria and Water Quality Impacts 158
Each of these programs requires engineered stormwater control structures for high-density
projects; however, no engineered stormwater controls are required for low-density projects.
High density is defined as more than 24 percent built-upon area or more than two dwelling units
per acre. Recent reviews of scientific literature, however, show that varying degrees of stream
degradation and impairment occurs when there are no structural stormwater controls and 10 to 15
percent impervious surface cover is established (Mallin et al., 2000).
Since 1990, over 1,157 acres of Class SA, ORW waters have been closed to commercial shellfish
harvesting in North Carolina due to elevated levels of bacteria. The Shellfish Sanitation Program
through DEH notes that stormwater runoff is the primary cause of bacterial contamination in
more than 90 percent of the shellfish areas sampled (Street et al., 2005).
In light of the increased acreage of areas closed to shellfish harvesting, DWQ embarked on a
study of the current conditions and impacts to the state’s shellfish waters. DWQ found that
between 1988 and 2005, 73 percent of new impervious surfaces in coastal areas were constructed
under low-density provisions (<24 percent impervious surfaces), which do not require
engineered stormwater controls. Instead these low-density projects rely on practices such as
grass swales to protect water quality. The use of swales for low-density areas indicates only a 25
percent effectiveness rate in reducing bacterial contaminants. Instead of protecting water quality,
grass swales may actually contribute to bacterial loading by providing a conduit to increase
runoff volumes and rates. In contrast, engineered stormwater controls for high-density areas
include wet ponds and wetlands with 70 and 78 percent bacteriological removal rates,
respectively, if they are installed and maintained properly.
DWQ assessed recent data and information on acres of shellfish closures in six tidal creeks in
New Hanover County in the Neuse River basin (Mallin, 2006). The research focused on a
county whose population grew 25 percent between 1990 and 2000 and is expected to increase an
additional 31 percent by 2020. The research found a strong correlation between bacteria levels
and impervious surfaces in the watershed – the greater the amount of impervious surfaces, the
greater the bacteria levels. This correlation has also been documented by other research in South
Carolina’s coastal tidal creeks (Holland, 2004). In addition, there is a strong association between
turbidity and fecal coliform bacteria levels in these estuarine waters.
DWQ’s assessment of research results show that the acreages of shellfish waters closed to
shellfish harvesting has increased significantly between 1988 and 2005, and there have been new
closures after the implementation of the current stormwater programs. North Carolina waters
permanently closed to shellfishing have increased by approximately 19 percent since 1984. The
reliance on no engineered stormwater controls for low-density projects is the major identifiable
shortfall in the current programs. Without changes to these programs, there will be continued
degradation of shellfishing waters. More information on stormwater regulations and BMPs can
be found in Chapter 5.
CHAPTER 10 - Bacteria and Water Quality Impacts 159
10.4 REDUCING WATER QUALITY IMPACTS FROM BACTERIA
Even though state and federal agencies test water quality and regulate
microbial pollution across the nation, it is actions taken by local
governments and organizations that have the greatest potential to protect
waterbodies from bacterial threats. The ideas and/or management
strategies in this section are best implemented on the local level.
Education, watershed planning, good site design, stormwater control and
maintenance are practices that can be used to reduce total runoff volume
and bacterial loading to improve water quality and habitat conditions.
General Management
Strategies to Address
Bacteria in Surface and
Groundwater
Proper maintenance and
pumping of septic tanks
every three to five years.
Maintenance and repair
of sanitary sewer lines.
Elimination of straight
pipes.
10.4.1 REDUCING AND TREATING STORMWATER RUNOFF Proper management of
livestock to keep wastes
from reaching surface
water.
For the most part, bacteria enter recreational waterbodies through
stormwater runoff. There are many aspects of development that can
influence bacteria export from urban areas. Some of the most common
are the size of the disturbed area, size of vegetated buffer, amount of
impervious surface cover and the design and use of sediment or
stormwater control devices. Table 10-4 identifies structural and
nonstructural BMPs for urban stormwater control. Structural
Encourage local health
department to routinely
monitor those areas
known for organized
swimming.
BMPs are typically designed to reduce sediment and the pollutants associated with it (i.e.,
nutrients, microbes, metals). In addition to reducing sediment and bacterial loads, structural
BMPs can also stabilize streambanks and protect the riparian zone. Nonstructural BMPs such as
a design manual or a public outreach and education program encourage comprehensive and
effective implementation of structural BMPs. BMP characteristics, pollutant-specific
effectiveness, reliability, feasibility, costs and design considerations can be found in the DWQ
Manual of Stormwater Best Management Practices. The 1999 manual is being updated and the
draft 2005 version is available on the DWQ Web site
(http://h2o.enr.state.nc.us/su/Manuals_Factsheets.htm#StormwaterManuals). Information can
also be found on the NC State University Department of Biological and Agricultural Engineering
– Stormwater Engineering Group Web site (www.bae.ncsu.edu/stormwater/).
Table 10-4 Structural and Nonstructural BMPs for Urban Stormwater Control
NONSTRUCTURAL BMPS STRUCTURAL BMPS
Catch Basin Cleaning Wet Detention Basin Preventive Measures (i.e., limit
impervious surface cover)
Riparian Area Protection Constructed Wetlands Public Education Wet Retention Basin Pollutant Minimization Identification and
Enforcement of Illegal
Discharges
Dry Detention Basin Exposure Reduction (i.e.,
schedule/rotate land disturbance) Infiltration Basin
Vegetative Practices (i.e., filter
strips, grass swales with check
dams)
Landscaping and Lawn
Maintenance Controls
Animal Waste Collection Sand Filter Curb Elimination Oil and Grease Separator Parking Lot and Street Cleaning Rollover Curbing
Land Use Control (i.e.,
low impact development,
comprehensive site
planning, riparian zone
protection, conservation
easement)
CHAPTER 10 - Bacteria and Water Quality Impacts 160
10.4.2 LAND USE PLANNING TO REDUCE IMPACTS OF FUTURE DEVELOPMENT
A variety of land use planning techniques and policy options are available for a community to
consider in addressing nonpoint source pollution management and general water quality
problems. Zoning restrictions, development and design standards and BMPs can be incorporated
into many existing town and county ordinances, but each locality must decide how best to
allocate limited resources to protect water quality and prevent nonpoint source pollution while
still supporting economic growth. The only mandate for local land use plans in North Carolina is
the Coastal Area Management Act (CAMA), which requires land use plans for all twenty coastal
counties. The land use plan examines the relationship between land uses and other areas of
interest such as transportation, recreation, infrastructure and protection of natural resources.
Through a planning process, a community gathers data and public input in an attempt to guide a
community’s future development (WECO, 2003).
Residents and visitors to North Carolina are beginning to speak out and demand more protection
of the natural resources people enjoy. Several examples can be found throughout the State where
citizen complaints and participation in local planning decisions have resulted in better and more
protective measures being installed in new residential and commercial developments. This is
particularly true in the twenty coastal counties.
Many communities are looking at the challenges and opportunities that development offers to
their communities seriously. For example, much of the Bogue Sound in the White Oak River
basin is closed to shellfish harvesting. Bogue Watch, which drains into Bogue Sound, is a new
development in Carteret County that is designed to control stormwater runoff and protect the
natural environment surrounding the sound. Site plans indicate that the development contains
287 lots with facilities (i.e., fishing piers, parks) on the water. The subdivision, which has nearly
25 percent of its land surface planned for impervious surfaces, will have six common areas with
five waterfront parks and piers. There will also be five holding ponds for stormwater runoff,
vegetated areas to filter runoff, 38 acres of open space and several large ponds for treated
wastewater. Four lots are not being developed to allow for stormwater controls. Based on the
local community, the developer determined that it was important to design Bogue Watch in such
a way that it would balance the community’s quality and way of life with environmental
protection.
Outside of Carteret County in the White Oak River basin, the Town of Bath (Beaufort County)
approved a 6-month moratorium on new subdivisions. The moratorium allowed the town board
time to assess how the town wanted to develop its remaining waterfront lots and where the town
needed to protect its resources. In addition, Pamlico County approved an ordinance to limit
density and height of developments along the water.
CHAPTER 10 - Bacteria and Water Quality Impacts 161
Proactive planning efforts at the local level are needed to
assure that development is done in a manner that maintains
water quality. Used effectively, land use planning can find a
balance between water quality protection, natural resource
management and economic growth. Growth management
requires planning for the needs of future population increases,
as well as developing and enforcing environmental protection
measures. These actions are critical to water quality
management and the quality of life for the residents of North
Carolina. County and regional land use plans should
incorporate proactive measures to meet future growth demands
to prevent water quality deterioration and consider cumulative
impacts to water quality. They should incorporate strategies
such as land conservation, open space and riparian area
protection to reduce the amount of stormwater runoff, and
consequently, bacteria entering a surface waterbody
Planning Recommendations
for New Development
Minimize number and width of
residential streets.
Minimize size of parking areas
(angled parking & narrower slots).
Place sidewalks on only one side of
residential streets.
Minimize culvert pipe and
hardened stormwater conveyances.
Vegetate road right-of-ways,
parking lot islands and highway
dividers to increase infiltration.
Plant and protect natural buffer
zones along streams and tributaries.
To prevent further impairment in urban watersheds, local governments should:
Identify and protect waters that are threatened by development.
Protect existing riparian habitat along streams and restore it where possible.
Implement stormwater BMPs during and after development.
Develop land use and site development plans that minimize disturbance in sensitive
areas.
Minimize impervious surfaces including roads and parking lots.
Develop public outreach programs to educate citizens about stormwater runoff.
Action needs be taken at the local level to plan for new development in urban and rural areas.
For more detailed information regarding recommendations for new development, refer to EPA’s
Watershed Academy Web site (www.epa.gov/owow/watershed/wacademy/acad2000/protection).
Information can also be found on the Center for Watershed Protection Web site (www.cwp.org)
and the Web site for the Low Impact Development Center (www.lowimpactdevelopment.org).
Land use planning and management techniques can also be found in the Nonpoint Source
Pollution Prevention and Control through Land Use Planning and Management Document
available on the DWQ Web site
(http://h2o.enr.state.nc.us/nps/CNPSCP/documents/FinalNPSManual.pdf). For an example of
local community planning effort to reduce stormwater runoff, visit
www.charmeck.org/Home.htm.
10.4.3 ON-SITE WASTEWATER MANAGEMENT
Throughout the state, the increase in development has resulted in an increase in demand for
individual wastewater treatment systems. Many require higher flows on small tracks of land.
Wastewater from many households is not treated at wastewater treatment plants associated with
NPDES discharge permits. Instead, it is treated on-site through the use of permitted septic
systems. Poorly planned and/or maintained systems can fail and contribute to nonpoint source
CHAPTER 10 - Bacteria and Water Quality Impacts 162
pollution. Wastewater from some of these homes illegally discharges directly to streams through
what is known as a "straight pipe". In other cases, wastewater from failing septic systems makes
its way to streams or contaminates groundwater. Straight piping and failing septic systems are
illegal discharges of wastewater into waters of the state.
With on-site septic systems, the septic tank unit treats some wastes, and the drainfield associated
with the septic tank provides further treatment and filtration of the pollutants and pathogens
found in wastewater. A septic system that is operating properly does not discharge untreated
wastewater to streams and lakes or to the ground’s surface where it can run into nearby surface
waters. Septic systems are a safe and effective long-term method for treating wastewater if they
are sited, sized and maintained properly. If the tank or drainfield are improperly located or
constructed, or the systems are not maintained, nearby wells and surface waters may become
contaminated, causing potential risks to human health. Septic tanks must be properly installed
and maintained to ensure they function properly over the life of the system. Information about
the proper installation and maintenance of septic tanks can be obtained by calling the
environmental health sections of the local county health departments.
Several studies have evaluated septic systems and the impact they can have on bacterial numbers
within a waterbody. For example, research in areas of South Florida found that septic tanks in
porous soils can readily pass through the soil and enter coastal waters near the shore within
hours. In some areas, fecal bacteria counts were higher upon outgoing tides and in wetter years
due to subsurface movement through saturated soils and increased runoff due to rain. Ditching
and draining appear to facilitate the flow of septic waste to surface waters (Paul et al. 2000). The
conclusion – sandy soils and high water tables appear to be unsuitable for septic systems, yet
these systems are relied on heavily in many coastal areas (including eastern North Carolina) for
waste management.
Research (Tschetter and Maiolo, 1984) has also shown a correlation between coastal population
growth in North Carolina and the closure of waters to shellfishing. Unfortunately, this work is
too general to be useful for land management purposes. A specific study of coastal watersheds in
New Hanover County (Duda and Cromartie, 1982), however, found that closings generally
occurred in areas that had more than one septic system drainfield per every seven acres of
watershed. It is unclear how subsurface drainage networks may have contributed to the closings,
or how widely the results of this investigation can be applied. The results, however, indicate that
there is an empirical relationship between land development and shellfish water closures that
should not be ignored if shellfish waters are to be adequately protected or restored.
Local governments around the country are finding innovative ways to address improperly
installed and/or failing septic systems. For example, in order to protect water quality in the
Chesapeake Bay, Arlington County, Virginia has adopted an ordinance requiring all septic tanks
be pumped at least once every five years (USEPA, 1993). Stinson Beach, California developed a
management program for on-site systems after discovering that malfunctioning systems were
threatening public health (Herring, 1996). Homeowners here pay a monthly fee to cover the cost
of inspections and testing, in addition to any construction and repair costs (USEPA, 1993). In
the Puget Sound area, where a significant shellfish resource has been threatened by fecal
CHAPTER 10 - Bacteria and Water Quality Impacts 163
coliform contamination from a number of sources, most counties have established revolving loan
funds to facilitate the repair of failing systems (Center for Watershed Protection, 1995).
Experience has shown that widespread community support is generally necessary to mount an
effective campaign that addresses septic system contamination issues, and that this support is
unlikely to be forthcoming in the absence of any significant perceived benefits (Herring, 1996).
In North Carolina, the Wastewater Discharge Elimination (WaDE) Program
(http://www.deh.enr.state.nc.us/osww_new//WaDE.htm) through the OSWS in DEH was
established pursuant to Senate Law 1996-18es2, Section 27.26
(http://www.ncleg.net/gascripts/BillLookUp/BillLookUp.pl?Session=1995e2&BillID=H53), to
identify and eliminate discharges from straight pipes and failing septic systems to land surfaces
and streams. Funds appropriated by the NC General Assembly support a two-member team to
address the straight pipe and failing septic system issues in North Carolina. Additional financial
support has been secured through grants from the NC CMTF and the EPA 319 Non-Point Source
Program (http://www.epa.gov/owow/nps/cwact.html).
Strong collaboration with local and federal agencies as well as the public, the media and
environmental groups is the hallmark of the WaDE program and the key to its successes thus far.
10.4.4 MONITORING SANITARY SEWERS
Sewer connections can leak or rupture, allowing sewage to flow into surface waterbodies.
Common causes of sewer failures and overflows are tree roots growing into sewer lines,
excessive rainfall and age. Grease, a by-product of cooking, can also enter sanitary sewers
through household and/or restaurant drains. Grease sticks to the inside of sewer pipes, building
up over time. If the entire sewer pipe becomes blocked, sewage can overflow into yards, streets
and surface water.
To help prevent bacterial contamination from human and industrial waste, communities should
evaluate where sewer lines are in relation to a stream corridor, replace fractured or damaged
sewer lines and monitor lines regularly. When evaluating the need for sewer line extensions,
communities should keep in mind that extensions to existing water and sewer lines encourage
more development, which often results in more impervious surface cover and nonpoint source
pollution from cumulative and secondary impacts.
CHAPTER 10 - Bacteria and Water Quality Impacts 164
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Herring, J. 1996. A Private Market Approach to On-Site Wastewater Treatment System
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