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HomeMy WebLinkAbout20191579 Ver 1_17BP.4.R.101 Aquatic Species Survey Report_20191118Aquatic Species Survey Report Improvements to Leggett Rd (SR 1243) over Tar River Edgecombe County, North Carolina WBS Element # 17BP.4.R.101 Tar River during the survey efforts Prepared For: F uoerH � A 3 6 4 ` OF NC Department of Transportation Raleigh, North Carolina Contact Person: Jared Gray Biological Surveys Group North Carolina Department of Transportation jgray(�ic ncdot. gov 1598 Mail Service Center Raleigh NC 27699-1598 March 14, 2018 Prepared by: 324 Blackwell Street, Suite 1200 Durham, NC 27701 Contact Person: Tom Dickinson tom.dickinson@threeoaksengineering.com 919-732-1300 Table of Contents 1.0 Introduction.......................................................................................................................... 1 2.0 Waters Impacted.................................................................................................................. 1 2.1 303(d) Classification........................................................................................................ 2 2.2 NPDES discharges........................................................................................................... 2 3.0 Target Federally Protected Species Descriptions................................................................ 2 3.1 Alasmidonta heterodon (Dwarf Wedgemussel)............................................................... 2 3.1.1. Species Characteristics.............................................................................................. 2 3.1.2. Distribution and Habitat Requirements.................................................................... 3 3.1.3. Threats to Species..................................................................................................... 3 3.2 Parvaspina steinstansana (Tar River Spinymussel)........................................................ 4 3.2.1. Species Characteristics.............................................................................................. 4 3.2.2. Distribution and Habitat Requirements.................................................................... 5 3.2.3. Threats to Species..................................................................................................... 6 3.3 Elliptio lanceolata (Yellow Lance).................................................................................. 6 3.3.1. Species Characteristics.............................................................................................. 6 3.3.2. Distribution and Habitat Requirements.................................................................... 6 3.3.3. Threats to Species..................................................................................................... 7 3.3.4. Species Listing.......................................................................................................... 7 4.0 Other Target Species Descriptions....................................................................................... 7 4.1 Fusconaia masoni (Atlantic Pigtoe)................................................................................. 7 4.1.1. Species Characteristics.............................................................................................. 7 4.1.2. Distribution and Habitat Requirements.................................................................... 8 4.1.3. Threats to Species..................................................................................................... 8 4.1.4. Species Listing.......................................................................................................... 8 4.2 Necturus lewisi (Neuse River Waterdog)......................................................................... 9 4.2.1. Species Characteristics.............................................................................................. 9 4.2.2. Distribution and Habitat Requirements.................................................................... 9 4.2.3. Threats to Species................................................................................................... 10 4.2.4. Species Listing........................................................................................................ 10 4.3 Noturus furiosus (Carolina Madtom)............................................................................. 10 4.3.1. Species Characteristics............................................................................................ 10 4.3.2. Distribution and Habitat Requirements.................................................................. 10 4.3.3. Threats to Species................................................................................................... 11 4.3.4. Species Listing........................................................................................................ 11 5.0 Survey Efforts.................................................................................................................... 11 5.1 Stream Conditions at Time of Survey: Tar River.......................................................... 11 5.2 Methodology.................................................................................................................. 12 5.2.1. Mussel Surveys....................................................................................................... 12 5.2.2. Neuse River Waterdog Surveys.............................................................................. 12 6.0 Results................................................................................................................................13 6.1 Mussel Survey Results................................................................................................... 13 6.2 Neuse River Waterdog Survey Results.......................................................................... 13 7.0 Discussion/Conclusions..................................................................................................... 14 8.0 Literature Cited.................................................................................................................. 15 Appendix A. Figures: Figure 1: Project Vicinity & Survey Reach Figures 2-1 through 2-6: NCNHP Element Occurrences Figure 3: 303(d) Listed Streams and NPDES Discharges 1.0 INTRODUCTION The North Carolina Department of Transportation (NCDOT) proposes improvements to Leggett Road (SR 1243) over Tar River in Edgecombe County (Appendix A, Figure 1). The Federally Endangered Dwarf Wedgemussel (Alasmidonta heterodon, DWM) is listed by the U.S. Fish and Wildlife Service (USFWS) for Edgecombe County, though there are no records in the county. The Tar River Spinymussel (Parvaspina steinstansana, TSM [formerly Elliptio steinstansana (Perkins et al. 2017)]) is listed by USFWS for Edgecombe County and has current records. Additionally, the Yellow Lance (Elliptio lanceolata) was proposed for listing by the USFWS on April 5, 2017, and is known to occur in Edgecombe County. The Atlantic Pigtoe (Fusconaia masoni), Neuse River Waterdog (Necturus lewisi), and Carolina Madtom (Noturus furiosus) are also being considered for listing by the USFWS and are known to occur in Edgecombe County. Tables 1 lists the nearest element occurrence (EO) in approximate river miles (RM) for targeted species for the project crossing. Data is according to the NC Natural Heritage Program database (NCNHP 2018) most recently updated in January 2018. Table 1—Element Occurrences Distance from EO crossing First Last EO Species Name EO ID Waterbod RM Observed Observed Status* Figure Dwarf 20981 Stony Creek 26.0 May 1991 July 1992 C 2-1 Wed emussel Tar River October 21438 Tar River 20.8 May 1977 C 2 2 S in ussel 2001 21947 Stony Creek 8.5 May 1991 May 1991 H Yellow Lance November November 2-3 34945 Swift Creek 35.3 C 2004 2004 September Atlantic Pigtoe 19338 Tar River 18.0 July 2004 C 2-4 1982 Neuse River 3793 Tar River At crossing January January C 2-5 Waterdog 1980 2015 19769 Tar River 1.6 1888 May 1985 H Carolina Madtom September 2-6 14421 Swift Creek 18.0 August 2007 C 1959 *: C — NCNHP Current; H —NCNHP Historic As part of the federal permitting process that requires an evaluation of potential project -related impacts to federally protected species, Three Oaks Engineering (Three Oaks) was contracted by NCDOT to conduct surveys targeting the DWM, TSM, Yellow Lance, Atlantic Pigtoe, Neuse River Waterdog, and Carolina Madtom. 2.0 WATERS IMPACTED The Tar River is in the Upper Tar subbasin of the Tar River basin (HUC# 03020101). The Tar River flows approximately 80 RM to its confluence with the Pamilco River. Tar River SR 1243 Survey Report March 2018 Job# 17-014 Page 1 2.1 303(d) Classification Tar River is not on the North Carolina Department of Environmental Quality (NCDEQ, formerly NC Department of Environment and Natural Resources, NCDENR) - Division of Water Resources 2014 Final 303(d) list of impaired streams. The 2016 Draft 303(d) list of impaired streams does not propose changes to the 2014 list in the vicinity of this project. The closest 303(d) listed stream is Stony Creek, which flows into the Tar River approximately 7.6 RM upstream of the project crossing; Stony Creek is listed as impaired due to exceeding criteria for both Benthos (Fair) and Dissolved Oxygen (Figure 3). 2.2 NPDES discharges The closest NPDES discharge is on the Tar River within 1.0 miles upstream of the SR 1243 crossing of the Tar River: Tar River Regional Waste Water Treatment Plant (NPDES Permit # NC0030317) (Figure 3, USEPA 2017). 3.0 TARGET FEDERALLY PROTECTED SPECIES DESCRIPTIONS 3.1 Alasmidonta heterodon (Dwarf Wedgemussel) 3.1.1. Species Characteristics The DWM was originally described as Unio heterodon (Lea 1829). Simpson (1914) subsequently placed it in the genus Alasmidonta. Ortmann (1919) placed it in a monotypic subgenus Prolasmidonta, based on the unique soft -tissue anatomy and conchology. Fuller (1977) believed the characteristics of Prolasmidonta warranted elevation to full generic rank and renamed the species Prolasmidonta heterodon. Clarke (1981) retained the genus name Alasmidonta and considered Prolasmidonta to be a subjective synonym of the subgenus Pressodonta (Simpson 1900). The specific epithet heterodon refers to the chief distinguishing characteristic of this species, which is the only North American freshwater mussel that consistently has two lateral teeth on the right valve and only one on the left (Fuller 1977). All other laterally dentate freshwater mussels in North America normally have two lateral teeth on the left valve and one on the right. The DWM is generally small, with a shell length ranging between 25 millimeters (mm) (1.0 inch) and 38 mm (1.5 inches). The largest specimen reported by Clarke (1981) was 56.5 mm (2.2 inches) long, taken from the Ashuelot River in New Hampshire. The periostracum is generally olive green to dark brown; nacre bluish to silvery white, turning to cream or salmon colored towards the umbonal cavities. Sexual dimorphism occurs in DWM, with the females having a swollen region on the posterior slope, and the males are generally flattened. Clarke (1981) provides a detailed description of the species. Nearly all freshwater mussel species have similar reproductive strategies; a larval stage (glochidium) becomes a temporary obligatory parasite on a fish. Many mussel species have specific fish hosts, which must be present to complete their life cycle. Based upon laboratory infestation experiments, Michaelson and Neves (1995) determined that potential fish hosts for the DWM in North Carolina include the Tessellated Darter (Etheostoma olmstedi) and the Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 2 Johnny Darter (E. nigrum). McMahon and Bogan (2001) and Pennak (1989) should be consulted for a general overview of freshwater mussel reproductive biology. 3.1.2. Distribution and Habitat Requirements The historic range of the DWM is confined to Atlantic slope drainages from the Peticodiac River in New Brunswick, Canada, south to the Neuse River, North Carolina. Occurrence records exist from at least 70 locations, encompassing 15 major drainages, in 11 states and one Canadian Province (USFWS 1993). When the recovery plan for this species was written, the DWM was believed to have been extirpated from all but 36 localities, 14 of them in North Carolina (USFWS 1993). The most recent assessment (2013 5-Year Review) indicates that the DWM is currently found in 16 major drainages, comprising approximately 75 "sites" (one site may have multiple occurrences). At least 45 of these sites are based on less than five individuals or solely on relict shells. It appears that the populations in North Carolina, Virginia, and Maryland are declining as evidenced by low densities, lack of reproduction, or inability to relocate any individuals in follow-up surveys. Populations in New Hampshire, Massachusetts, and Connecticut appear to be stable, while the status of populations in the Delaware River watershed affected by the multiple flood events between 2004 and 2006 are still being studied (USFWS 2013). Strayer et al. (1996) conducted range -wide assessments of remaining DWM populations, and assigned a population status to each of the populations. The status rating is based on range size, number of individuals and evidence of reproduction. Seven of the 20 populations assessed were considered "poor," and two others are considered "poor to fair" and "fair to poor," respectively. In North Carolina, populations are found in portions of the Neuse and Tar River basins; however, they are believed to have been extirpated from the main -stem of the Neuse River. The DWM inhabits creeks and rivers of varying sizes (down to approximately two meters wide), with slow to moderate flow. A variety of preferred substrates have been described that range from coarse sand, to firm muddy sand, to gravel (USFWS 1993). In North Carolina, DWM often occurs within submerged root mats along stable streambanks. The wide range of substrate types used by this species suggests that the stability of the substrate is likely as important as the composition. 3.1.3. Threats to Species The cumulative effects of several factors, including sedimentation, point and non -point discharge, stream modifications (impoundments, channelization, etc.) have contributed to the decline of this species throughout its range. Except for the Neversink River population in New York, which has an estimated population of over 80,000 DWM individuals, all the other populations are generally small in numbers and restricted to short reaches of isolated streams. The low numbers of individuals and the restricted range of most of the surviving populations make them extremely vulnerable to extirpation from a single catastrophic event or activity (Strayer et al. 1996). Catastrophic events may consist of natural events such as flooding or drought, as well as human influenced events such as toxic spills associated with highways, railroads, or industrial -municipal complexes. Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 3 Siltation resulting from substandard land -use practices associated with activities such as agriculture, forestry, and land development has been recognized as a major contributing factor to degradation of mussel populations. Siltation has been documented to be extremely detrimental to mussel populations by degrading substrate and water quality, increasing potential exposure to other pollutants, and direct smothering of mussels (Ellis 1936, Marking and Bills 1979). Sediment accumulations of less than one inch have been shown to cause high mortality in most mussel species (Ellis 1936). In Massachusetts, a bridge construction project decimated a population of the DWM because of accelerated sedimentation and erosion (Smith 1981). Sewage treatment effluent has been documented to significantly affect the diversity and abundance of mussel fauna (Goudreau et al. 1988). Goudreau et al. (1988) found that recovery of mussel populations may not occur for up to two miles below points of chlorinated sewage effluent. The impact of impoundments on freshwater mussels has been well documented (USFWS 1992a, Neves 1993). Construction of dams transforms lotic habitats into lentic habitats, which results in changes in aquatic community composition. The changes associated with inundation adversely affect both adult and juvenile mussels, as well as fish community structure, which could eliminate possible fish hosts for upstream transport of glochidia. Muscle Shoals on the Tennessee River in northern Alabama, once the richest site for naiads (mussels) in the world, is now at the bottom of Wilson Reservoir and covered with 19 feet of muck (USFWS 1992b). Large portions of all the river basins within the DWM's range have been impounded; this is believed to be a major factor contributing to the decline of the species (Master 1986). The introduction of exotic species such as the Asian Clam (Corbicula fluminea) and Zebra Mussel (Dreissena polymorpha) has also been shown to pose significant threats to native freshwater mussels. The Asian Clam is now established in most of the major river systems in the United States (Fuller and Powell 1973), including those streams still supporting surviving populations of the DWM. Concern has been raised over competitive interactions for space, food and oxygen with this species and native mussels, possibly at the juvenile stages (Neves and Widlak 1987, Alderman 1995). The Zebra Mussel, native to the drainage basins of the Black, Caspian, and Aral Seas, is an exotic freshwater mussel that was introduced into the Great Lakes in the 1980s and has rapidly expanded its range into the surrounding river basins, including those of the South Atlantic slope (O'Neill and MacNeill 1991). This species competes for food resources and space with native mussels, and is expected to contribute to the extinction of at least 20 freshwater mussel species if it becomes established throughout most of the eastern United States (USFWS 1992b). The Zebra Mussel is not currently known to be present in any river supporting DWM population, nor the Tar -Pamlico River basin. 3.2 Parvaspina steinstansana (Tar River Spinymussel) 3.2.1. Species Characteristics The TSM grows to a maximum length of 60 mm. Short spines are arranged in a radial row anterior to the posterior ridge on one valve and symmetrical to the other valve. The shell is generally smooth in texture with as many as 12 spines that project perpendicularly from the surface and curve slightly ventrally. However, adult specimens tend to lose their spines as they Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 4 mature (USFWS 1992a). The smooth, orange -brown to dark brown periostracum may be rayed in younger individuals. The shell is significantly thicker toward the anterior end and the nacre is usually pink in this area. The posterior end of the shell is thinner with an iridescent bluish white color. Two or more linear ridges, originating within the beak cavity and extending to the ventral margin, can be found on the interior surface of the shell. The distance between these ridges widens toward the ventral margin. Johnson and Clarke (1983) provide additional descriptive material. Little is known about the reproductive biology of the TSM (USFWS 1992c); however, nearly all freshwater mussel species have similar reproductive strategies, which involve a larval stage (glochidium) that becomes a temporary obligatory parasite on a fish. Many mussel species have specific fish hosts, which must be present to complete their life cycle. The TSM is probably a tachytictic (short-term) reproducer with gravid females present at some time from April through August (Widlak 1987). The glochidia have not been described. Eads and Levine (2008), and Eads et al. (2008) identified the following fish species as suitable hosts: Bluehead Chub (Nocomis leptocephalus), Pinewoods Shiner (Lythrurus matutinus), Satinfin Shiner (Cyprinella analostana), and White Shiner (Luxilus albeolus). McMahon and Bogan (2001) and Pennak (1989) should be consulted for a general overview of freshwater mussel reproductive biology. 3.2.2. Distribution and Habitat Requirements Previously, this mussel was believed to be endemic to the Tar -Pamlico River basin and probably ranged throughout most of the basin before the area was settled during the 1700s (NC Scientific Council on Mollusks 2011). Historically, the TSM was collected in the Tar River from near Louisburg in Franklin County to Falkland in Pitt County (approximately 78 RM). By the mid- 1960s, its known range had been reduced to the main channel of the Tar River from Spring Hope in Nash County to Falkland in Pitt County (Shelley 1972, Clarke 1983). By the early 1980s, its range in the Tar River was restricted to only 12 miles of the river in Edgecombe County (Clarke 1983). It was last observed (two individuals) in the river in 2001 within an extensive sandbar habitat in Edgecombe County (unpublished data, NCWRC Aquatics Database). It is currently found in three streams, Shocco, Sandy/Swift, and Fishing/Little Fishing creeks in the Tar - Pamlico River basin (unpublished data, NCWRC Aquatics Database). In 1998, the species was found in Johnston County in the Little River, a tributary to the Neuse River. Only a few individuals have been found in the Little River in subsequent years (unpublished data, NCWRC Aquatics Database). The preferred habitat of the TSM in the Tar -Pamlico River basin was described as relatively fast flowing, well -oxygenated, circumneutral pH water in sites prone to significant swings in water velocity, with a substrate comprised of relatively silt -free loose gravel and/or coarse sand (Adams et al., 1990). Various species associates, which are good indicators for the presence of the TSM, include (in decreasing order of association) Atlantic Pigtoe, Yellow Lance, Yellow Lampmussel (Lampsilis carioca), Notched Rainbow (Villosa constricta), Triangle Floater (Alasmidonta undulata), and Creeper (Strophitus undulatus) (Adams et al., 1990). Johnson (1970) stated that the Atlantic Pigtoe appeared to be closely associated with the James River Spinymussel (Parvaspina collina) in the James River basin. This same close association is true for the TSM and Atlantic Pigtoe. In habitats which have not been significantly degraded in the Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 5 Tar -Pamlico River basin, the presence of Atlantic Pigtoe is the best indicator of the potential presence of TSM (NC Scientific Council on Mollusks 2011). 3.2.3. Threats to Species Threats to the TSM are similar to those described for the DWM and have contributed to the decline of this species throughout its range. All the remaining TSM populations are generally small in numbers and restricted to short reaches of isolated streams. The low numbers of individuals and the restricted range of most of the surviving populations make them extremely vulnerable to extirpation from a single catastrophic event. 3.3 Elliptio lanceolate (Yellow Lance) 3.3.1. Species Characteristics The Yellow Lance was described from the Tar River at Tarboro, North Carolina in 1828, by I. Lea (Lea 1828). Johnson (1970) synonymized this species with 25 other named species of lance - shaped elliptio mussels into Elliptio lanceolata species complex. Genotypic and phenotypic analysis suggests that some of these formally described species are valid, including Elliptio lanceolata (Bogan et al. 2009). This species differs from other lanceolate Elliptios by having a "waxy" bright yellow periostracum that lacks rays. Some older specimens are brown towards the posterior end of the shell. The periostracum can also have brown growth rests. Yellow Lance have a distinct pallial line and adductor muscle scars. The posterior ridge is distinctly rounded and curves dorsally towards the posterior end. The nacre ranges from an iridescent blue on the posterior end, sometimes becoming white or salmon colored on the anterior end. The lateral teeth are long, with two on the left and one on the right. Each valve also has two psuedocardinal teeth; on the left valve one tooth is before the other with the posterior tooth tending to be vestigial, and on the right valve the two teeth are parallel and the more anterior one is vestigial (Adams et al 1990). The Yellow Lance is a tachytictic (short-term) breeder, brooding young in early spring and releasing glochidia in early summer. White Shiner and Pinewoods Shiner are potential fish hosts for Yellow Lance (Eads and Levine 2009). 3.3.2. Distribution and Habitat Requirements This species taxonomy has changed several times and therefore so has its range. The Yellow Lance is currently thought to be distributed in the Atlantic Slope river basins from the Neuse River Basin in North Carolina north to the Rappahannock River Basin in Virginia, except for the Roanoke River Basin, the Patuxent River Basin in Maryland and possibly the Potomac River Basin in Virginia and Maryland (USFWS 2017). It is in considerable decline throughout its range; however, extant populations still occur in all the historic river basins, except possibly the Potomac (USFWS 2017). This species has been found in multiple physiographic provinces, from the foothills of the Appalachian Mountains, through the Piedmont and into the Coastal Plain, in small streams to large rivers, in substrates primarily consisting of clean sand, and occasionally gravel, with a high dissolved oxygen content (USFWS 2017, Adams et al 1990). Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 6 No remaining populations appear below point source pollution or other nutrient -rich areas (Alderman 2003). Associate mussel species include Atlantic Pigtoe, Tar River Spinymussel, Yellow Lampmussel, Notched Rainbow, Triangle Floater, Paper Pondshell (Utterbackia imbecillis), Eastern Lampmussel (Lampsilis radiata), Creeper, and other Elliptio species (Adams et al 1990). 3.3.3. Threats to Species Threats to the Yellow Lance and many other species are similar to those described above for the DWM. Factors that influence long term viability of this species are discussed in detail in the USFWS Yellow Lance Species Status Review (2017). 3.3.4. Species Listing This species was petitioned for federal listing under the Endangered Species Act of 1973, as amended (ESA) within the 2010 Petition to List 404 Aquatic, Riparian and Wetland Species from the Southeastern United States by the Center for Biological Diversity (CBD) (CBD 2010). It became proposed for listing by USWFS on April 5, 2017. Yellow Lance is listed as Endangered in North Carolina. 4.0 OTHER TARGET SPECIES DESCRIPTIONS 4.1 Fusconaia masoni (Atlantic Pigtoe) 4.1.1. Species Characteristics The Atlantic Pigtoe was described by Conrad (1834) from the Savannah River in Augusta, Georgia. Although larger specimens exist, the Atlantic Pigtoe seldom exceeds 50 mm (2 inches) in length. This species is tall relative to its length, except in headwater stream reaches where specimens may be elongated. The hinge ligament is relatively short and prominent. The periostracum is normally brownish, has a parchment texture, and young individuals may have greenish rays across the entire shell surface. The posterior ridge is biangulate. The interdentum in the left valve is broad and flat. The anterior half of the valve is thickened compared with the posterior half, and, when fresh, nacre in the anterior half of the shell tends to be salmon colored, while nacre in the posterior half tends to be more iridescent. The shell has full dentation. In addition to simple papillae, branched and arborescent papillae are often seen on the incurrent aperture. In females, salmon colored demibranchs are often seen during the spawning season. When fully gravid, females use all four demibranchs to brood glochidia (VDGIF 2014). The Atlantic Pigtoe is a tachytictic (short-term) breeder, brooding young in early spring and releasing glochidia in early summer. The Bluegill (Lepomis macrochirus) and Shield Darter (Percina peltata) have been identified as potential fish hosts for this species (O'Dee and Waters 2000). Additional research has found Rosefin Shiner (Lythrurus ardens), Creek Chub (Semotilus atromaculatus), and Longnose Dace (Rhynichthys cataractae) are also suitable hosts (Wolf 2012). Eads and Levine (2011) found White Shiner, Satinfin Shiner, Bluehead Chub, Rosyside Dace (Clinostomus funduloides), Pinewoods Shiner, Creek Chub, Swallowtail Shiner (Notropis Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 7 procne), and Mountain Redbelly Dace (Chrosomus oreas) to also be suitable hosts for Atlantic Pigtoe. 4.1.2. Distribution and Habitat Requirements Johnson (1970) reported the range of the Atlantic Pigtoe extended from the Ogeechee River Basin in Georgia north to the James River Basin in Virginia; however, recent curation of the H. D. Athearn collection uncovered valid specimens from the Altamaha River in Georgia (Sarah McRae, USFWS, personal communication). It is presumed extirpated from the Catawba River Basin in North and South Carolina south to the Altamaha River Basin. The general pattern of its current distribution indicates that the species is currently limited to headwater areas of drainages and most populations are represented by few individuals. In North Carolina, aside from the Waccamaw River, it was once found in every Atlantic Slope river basin. Except for the Tar River, it is no longer found in the mainstem of the rivers within its historic range (Savidge et al. 2011). It is listed as Endangered in Georgia, South Carolina, and North Carolina, and as Threatened in Virginia. It has a NatureServe rank of G2 (imperiled). The Atlantic Pigtoe has been found in multiple physiographic provinces, from the foothills of the Appalachian Mountains, through the Piedmont and into the Coastal Plain, in streams less than one meter wide to large rivers. The preferred habitat is a substrate composed of gravel and coarse sand, usually at the base of riffles; however, it can be found in a variety of other substrates and lotic habitat conditions. 4.1.3. Threats to Species Threats to the Atlantic Pigtoe are similar to those described for the DWM and have contributed to the decline of this species throughout its range. Atlantic Pigtoe appears to be particularly sensitive to pollutants and requires clean, oxygen -rich water for all stages of life. All the remaining Atlantic Pigtoe populations are generally small in numbers and restricted to short reaches of isolated streams. The low numbers of individuals and the restricted range of most of the surviving populations make them extremely vulnerable to extirpation from a single catastrophic event. 4.1.4. Species Listing This species was petitioned for federal listing under the Endangered Species Act of 1973, as amended (ESA) within the 2010 Petition to List 404 Aquatic, Riparian and Wetland Species from the Southeastern United States by the CBD (CBD 2010), and is listed as Endangered in North Carolina by NCWRC. Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 8 4.2 Necturus lewisi (Neuse River Waterdog) 4.2.1. Species Characteristics The Neuse River Waterdog is a fully aquatic salamander and was first described by C.S. Brimley in 1924 as a subspecies of the Common Mudpuppy (N. maculosus); it was elevated to species status in 1937 by Percy Viosca, Jr. The Neuse River Waterdog ranges in size from 6-9 inches (15.24 — 22.86 cm) in length; record length is 11 inches (27.94 cm). It has a somewhat stocky, cylindrical body with smooth skin, a rather flattened, elongate head with a squared -off nose, and small limbs. The tail is vertically flattened with fins on both the top and bottom. Distinct from most salamanders, the Neuse River Waterdog, and other Necturus species, have four toes on each foot. The Neuse River Waterdog is a rusty brown color on the dorsal side and dull brown or slate colored on the ventral side. Both dorsal and ventral sides are strongly spotted but the ventral side tends to have fewer and smaller markings; spots are dark bluish to black. They also have a dark line running through the eye. Adults are neotenous and retain three bushy, dark red external gills usually seen in larval amphibians. Both male and female are similar in appearance and can be distinguished only through differences in the shape and structure of the cloaca (Beane and Newman 1996; Conant and Collins 1998; EDGE of Existence 2016). Individuals become sexually mature at approximately 5-6 years of age. Breeding normally occurs in the spring. The male deposits a gelatinous spermatophore that is picked up by the female and used to fertilize between 30-50 eggs. The fertilized eggs are attached to the underside of flat rocks or other submerged objects and guarded by the female until they hatch in June or July (Conant and Collins 1998; EDGE of Existence 2016). 4.2.2. Distribution and Habitat Requirements The Neuse River Waterdog is found only in the Neuse and Tar River basins of North Carolina (AmphibiaWeb 2006; Beane and Newman 1996; Frost 2016). Neuse River Waterdogs inhabit rivers and larger streams, where they prefer leaf beds in quiet waters. They need high levels of dissolved oxygen and good water quality. The Neuse River Waterdog is generally found in backwaters off the main current, in areas with sandy or muddy substrate. Adults construct retreats on the downstream side of rocks or in the stream bank where they remain during the day. They are active during the night, leaving these retreats to feed. Neuse River Waterdogs are carnivorous, feeding on invertebrates, small vertebrates, and carrion. Neuse River Waterdogs are most active during winter months even when temperatures are below freezing. During summer months, they will burrow into deep leaf beds and are rarely found. It has been suggested that this inactivity in summer may be an adaptation to avoid fish predators, which are more active at these times. In addition, Neuse River Waterdogs produce a defensive, toxic skin secretion that is assumed to be distasteful to predators (AmphibiaWeb 2006; Beane and Newman 1996; Conant and Collins 1998; EDGE of Existence 2016; NatureServe Explorer 2016). Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 9 4.2.3. Threats to Species Any factors that reduce water quality are threats to the Neuse River Waterdog. These can include changes that result in siltation and pollution reducing habitat quality (e.g. channelization, agricultural runoff, and industrial and urban development). Impoundments are also a threat to the dispersal of the species as it is unable to cross upland habitat; Neuse River Waterdogs do not climb and are unlikely to use fish passages (NatureServe Explorer 2016). 4.2.4. Species Listing This species was petitioned for federal listing under the Endangered Species Act of 1973, as amended (ESA) within the 2010 Petition to List 404 Aquatic, Riparian and Wetland Species from the Southeastern United States by the CBD (CBD 2010) and is listed as a species of Special Concern (SC) in North Carolina by NCWRC. 4.3 Noturus furiosus (Carolina Madtom) 4.3.1. Species Characteristics The Carolina Madtom (a small catfish) was described at Milburnie, near Raleigh, NC in the Neuse River by Jordan and Meek (Jordan 1889). The Carolina Madtom reaches a maximum size of 132 mm (5.2 inches). Compared to other madtoms within its range, it has a relatively short stout body and a distinctive color pattern of three to four dark saddles along its back that connect a long black stripe on the side running from the snout to the tail. The adipose fin is mostly dark, making it appear that the fish has a fourth saddle. The Madtom is tan on the rest of its body and yellow to tan between the saddles. The adipose fin and caudal fin are fused together, a distinguishing characteristic from other members of the catfish family (Ictaluridae). There are no speckles on the Madtom's belly, and the tail has two brown bands that follow the curve of the tail. The Carolina Madtom, like other catfishes, has serrae on its pectoral fins and is thought to have the most potent venom of any of the catfish species (NCWRC 2010). 4.3.2. Distribution and Habitat Requirements The Carolina Madtom is endemic to the Piedmont/Inner Coastal Plain portion of the Tar/Pamlico and Neuse River basins. It occurs in creeks and small rivers in habitats generally consisting of very shallow riffles with little current over coarse sand and gravel substrate (Lee et al. 1980). Burr et al (1989) found most records came from medium to large streams, i.e. mainstem Neuse and Tar Rivers and their major tributaries. The population in the Trent River system (part of the Neuse River basin) is isolated from the rest of the Neuse River basin by salinity levels, so it is therefore considered a separate population, though it has not been detected in Trent River in the last five years (Sarah McRae, USFWS, personal communication). In the lower portions of these rivers, Carolina Madtom is usually found over debris piles in sandy areas. During nesting season, which is from May to July, Madtoms prefer areas with plenty of cover to build their nests with shells, rocks, sticks, bottles, and cans, being suitable cover types. Males guard the nests, in which females may lay between 80 and 300 eggs. Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 10 Carolina Madtom is found in water that ranges from clear to tannin -rich, which is usually free - flowing. It is generally rare throughout its range and is apparently in decline. The Tar River population has historically been more robust than the Neuse River population (Burr et al. 1989), which has shown declines in recent years (Midway 2008). The Little River of the Neuse River Basin has the largest population of Madtom in the Neuse River Basin, with records from 2016 indicating the Madtom is present (Sarah McRae, USFWS, personal communication). A few specimens have been collected from Swift Creek of the Neuse River Basin. Fishing Creek and Swift Creek of the Tar River Basin are also productive systems in regard to Carolina Madtom populations, with around 14 specimens collected in the mid-1980s from Swift Creek (water levels in Fishing Creek prevented sampling during that study). In 2016, a total of 17 individuals were recorded in Swift Creek, and a total of four individuals were recorded in Fishing Creek (Sarah McRae, USFWS, personal communication). The Carolina Madtom has been observed in at least 36 localities (Burr et al 1989). Carolina Madtom has a lifespan of about four years, with sexual maturity being reached around two years in females and three years in males. Sampling for Carolina Madtom is most effective at dawn and dusk when they are most active and feeding (Mayden and Burr 1981). Their diet consists mostly of benthic macroinvertebrates, which they collect by scavenging for food on the bottom of the stream. 4.3.3. Threats to Species Identified threats to the species include water pollution and construction of impoundments (Burr et al. 1989). Carolina Madtom is susceptible to threats due to its limited range and low population densities (Angermeier 1995, Burr and Stoekel 1999). As a bottom -dwelling fish, Carolina Madtom is susceptible to habitat loss when stream bottoms are impacted by urbanization, impoundments, deforestation, etc. 4.3.4. Species Listing Because of its limited distribution, Carolina Madtom is listed as Special Concern and is Proposed Threatened in North Carolina. It was petitioned for federal listing under the Endangered Species Act of 1973, as amended (ESA) within the 2010 Petition to List 404 Aquatic, Riparian and Wetland Species from the Southeastern United States by the CBD (CBD 2010). 5.0 SURVEY EFFORTS Neuse River Waterdog surveys were conducted by Tim Savidge (Permit # 18-ES0034), Evan Morgan, John Roberts, Chris Sheats, and Lizzy Stokes -Cawley from February 26 — 27, 2018. Freshwater Mussel and Carolina Madtom surveys were conducted on February 27, 2018, by Tim Savidge, Chris Sheats, John Roberts, and Lizzy Stokes -Cawley. 5.1 Stream Conditions at Time of Survey: Tar River Habitat in the surveyed portion of the Tar River consisted of a deep run, with slack water areas formed by large accumulations of woody debris scattered throughout. The channel ranged from Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 11 100 to 150 feet wide with banks 16 to 24 feet high that exhibited moderate to severe signs of erosion and undercutting. Substrate consisted of shifting sand with pockets of gravel and cobble within the thalweg. Large accumulations of silt and detritus cover the substrate in the slackwater areas. The surveyed reach was bordered by a narrow -forested buffer surrounded by agricultural fields. The water was relatively clear with moderate velocity throughout. 5.2 Methodology 5.2.1. Mussel Surveys Mussel surveys were conducted from approximately 1,312 feet (400 meters) downstream of the respective bridge crossing to approximately 328 feet (100 meters) upstream of the crossing for a total distance of approximately 1,640 feet (500 meters) (Figure 1). Areas of appropriate habitat were searched, concentrating on the habitats preferred by the target species. The survey team spread out across the creek into survey lanes. Visual surveys were conducted using SCUBA (three people) and mask/snorkel (one person). Tactile methods were employed, particularly in streambanks under submerged rootmats. All freshwater bivalves were recorded and returned to the substrate. Timed survey efforts provided Catch Per Unit Effort (CPUE) data for each species. Relative abundance for freshwater snails and freshwater clam species were estimated using the following criteria: ➢ (VA) Very abundant > 30 per square meter ➢ (A) Abundant 16-30 per square meter ➢ (C) Common 6-15 per square meter ➢ (U) Uncommon 3-5 per square meter ➢ (R) Rare 1-2 per square meter ➢ (P-) Ancillary adjective "Patchy" indicates an uneven distribution of the species within the sampled site. During the mussel survey effort, the presence of preferred habitats for the Carolina Madtom were assessed and if conditions were appropriate, targeted visual surveys were conducted by overturning rocks and debris in these areas, as well as searching artificial cover (i.e. bottles, cans, etc.). 5.2.2. Neuse River Waterdog Surveys Methods were developed by Three Oaks in consultation with the USFWS and NC Wildlife Resources Commission (NCWRC) and were designed to replicate winter trapping efforts conducted as part of the recent species status assessment undertaken by these agencies and collaborators. A total of ten baited traps were set for four soak nights at the bridge crossing; three traps were set upstream and seven were set downstream of the bridge. Trap sites were selected based on habitat conditions and accessibility. Undercut banks, with some accumulation of leaf pack, as well as back eddy areas within runs were the primary microhabitats selected; however, all of the microhabitats (pool, riffle, run, etc.) occurring at a site were sampled with at least one trap. Traps were baited with a combination of chicken livers and hot dogs and allowed to soak overnight. The traps were checked daily, all species found within the traps were Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 12 recorded, and the traps were rebaited. If the targeted Neuse River Waterdog was found at a site, trapping efforts were discontinued. 6.0 RESULTS 6.1 Mussel Survey Results A total of 13.67 person hours of survey time were spent in the reach, with five species of freshwater mussel, the Box Spike (Elliptio cistellaeformis), Eastern Elliptio (Elliptio complanata), Carolina Slabshell (Elliptio congarea), Variable Spike (Elliptio icterina), and Roanoke Slabshell (Elliptio roanokensis) being found (Table 2). Other mollusk species located included the Asian Clam and two aquatic snails, Pointed Campeloma (Campeloma decisum) and Piedmont Elimia (Elimia virginica). In addition, one Neuse River Waterdog was observed during the survey. Table 2. CPUE for Freshwater Mussels in Tar River Scientific Name Common Name # live Abundance/ CPUE Freshwater Mussels CPUE Elliptio cistellae ormis Box Spike 19 1.39/hr Elliptio com lanata Eastern Elliptio 42 3.07/hr Elliptio con araea Carolina Slabshel 325 23.77/hr Elliptio icterina Variable Spike 28 2.05/hr Elliptio roanokensis goanoke Slabshell 2 0.15/hr Freshwater Snails and Clams Relative Abundance Cam eloma decisum Pointed Cam eloma — U Corbicula uminea Asian Clam C Elimia vir inica Piedmont Elimia PC Appropriate habitat for the Carolina Madtom was limited, but present in the reach. The species was not observed during these efforts. Three fish species, Tessellated Darter (Etheostoma olmstedi), Channel Catfish (Ictalurus punctatus), and Shorthead Redhorse (Moxostoma macrolepidotum) were observed while surveying for the Carolina Madtom. 6.2 Neuse River Waterdog Survey Results The Neuse River Waterdog was found at the project crossing during survey efforts; therefore, surveys were concluded after one trap night (Table 3). In addition, one American Eel (Anguilla rostrata) was captured during the trapping effort. Table 3. NRWD Survey: Species Found in Tar River Trap Day 1 Day 2 Day 3 Day 4 1 2 3 American Eel 1 Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 13 Table 3. NRWD Survey: Species Found in Tar River Neuse River Waterdog (1) N00010— ------ 7.0 DISCUSSION/CONCLUSIONS The results indicate that the study area supports a freshwater mussel fauna of four common species and the Roanoke Slabshell, which is currently listed as a species of Special Concern (SC) in North Carolina. No other mussel species were found. Neither the DWM, TSM, Yellow Lance, nor Atlantic Pigtoe were found during the surveys. While the target species were located, appropriate habitat is present; thus, the presence of additional species cannot be altogether ruled out. Several rare species are known from the Tar River and nearby tributaries (Section 1.0). Based on these survey results, adverse effects to the four target mussel species and the Carolina Madtom are unlikely to result from project construction but cannot be entirely discounted. Strict adherence to erosion control standards should minimize the potential for any adverse impacts to occur. The surveys confirm the continued presence of the Neuse River Waterdog within the project area. Biological conclusions on potential impacts from the project to the target species are provided below. The USFWS is the regulating authority for Section 7 Biological Conclusions and as such, it is recommended that they be consulted regarding their concurrence with the finding of this document. Biological Conclusion Dwarf Wedgemussel: May Affect/Not Likely to Adversely Affect Biological Conclusion Tar River Spinymussel: May Affect/Not Likely to Adversely Affect Biological Conclusion Yellow Lance: May Affect/Not Likely to Adversely Affect While the following species are not currently federally protected and biological conclusions are not necessary at the time of the writing of this report, if these species were to receive federal protection, appropriate biological conclusions are as follows: Biological Conclusion Atlantic Pigtoe: May Affect/Not Likely to Adversely Affect Biological Conclusion Neuse River Waterdog: Unresolved Biological Conclusion Carolina Madtom: May Affect/Not Likely to Adversely Affect Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 14 8.0 LITERATURE CITED Adams, W. F., J. M. Alderman, R. G. Biggins, A. G. Gerberich, E. P. Keferl, H. J. Porter, and A. S.Van Devender. 1990. 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Virginia Tech Conservation Management Institute, Project No. 11-108. 55pp. Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 20 APPENDIX A Figures Tar River SR 1243 Survey Report March 2018 Job# 17-108 Page 21 \p\ EIRl* Prepared For: AWA 4 t Aquatic Species Survey 17BP.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) Project Vicinity & Survey Reach Edgecombe County, North Carolina Date: March 2018 Scale: 0 200 400 Feet Job No.: 17-108 Drawn By: Checked B.v: KEMS TWS Figure - - �-- -- Y"x s c $ ' ILI. r e 33 us 3,4 4 for f'V NC,I oFr 8 4 to a,k =mot „tip f NC 48 crs EO ID 20981 j \ £ �1 � US 3 l _ fr Bridge #54 ,�464, US 6a U5 __ d US64 ashvllle 6r - rsx ,77 $fora ��IlG c, 6�'' _ 7rc E'fi Nc se 1L+1 r��7/� C _ o 412 Rocky fAa C Nc 4i 1� G C 4�udIT p ',, US 64 195 In h tic 97 �: _ n t3} SPo Cree 3 y} o, r �' 7 L SLL1 Cak J 13 97 ` - $h ar'), tbw q fTi iv6' a pf .��r�� - _ U530 46, Survey Site 5 „`� -� 1 C1�COu. i - NCNHP Element Occurence ��� A rr m i�, `YTS �y� Carry Cr,� _ k Stream U� �_ 1 �---� County Boundary 00 en treetMap (aod), ,orTfrlb s, C - Y-SA Pre pared For: 3u19�� Aquatic Species Survey 17BP.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) NCNHP Element 0ccurences: Dwarf Wedgemussel Edgecombe County, North Carolina Date: March 2018 Scale: 0 1 2Miles I i I Job No.: 17-108 Drawn By: Checked By: KEMS TWS Figu re 2-1 Moore - � NC .f' Q �c00C r Oft_ r - �}4 Us EQ ID 21437 Bridge #54 - r . ✓ At Greek 'P 1•vrbar US 64 _ e�K Walnu k Gr © EO ID 21438 C 43 4 '�� �'- 0 S— -- — NC33 b4 Ln GQ):'l� S _ �? 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Uo Aquatic Species Survey 17BP.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) NCNHP Element 0ccurences: Yellow Lance Edgecombe County, North Carolina 64 1 ",*us6-4 V NC `e EO ID 22004 EO ID 137451 A ch Date: March 2018 Scale: 0 0.5 1 Miles I Job No.: 17-108 Drawn By: Checked By: KEMS TWS Figu 2-3 .a .--• riRL-IFAX COUNTY t"EDGECC}MBE COUNTY NC 7 Pson Gc S7 (;reek s �^y c4 r, orr NC 47 Us� f - US 64 Wafnu t.' - t _ to 13 f�_--.--- V3 ..sueUS 64 Oa 1 NC 43 A Survey Site - NCNHP Element Occurence i Stream 1---� County Boundary p\ EIRl* Prepared For: t. _ v � tk 94'1j33 :Is]�� yto _ NC 33 NC 111 NC 122 Aquatic Species Surrey 17BP.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) I ICNHP Element 0ccurences: Atlantic Pigtoe Edgecombe County, North Carolina EO ID 19338 Us 64� J.37 NC 33 Date: March 2018 Scale: 0 0.5 1 Miles I Job No.: 17-108 Drawn By: Checked By: KEMS TWS m J -BY=SA Figu re 2-4 .Flab 14r I US 64 M 43 n c_n NC 48 us r US k4m- (EID 3703 EO ID 3793 __JBridge #54 4FSA r sr: _ I' o .;a �rlo Ck�Nc43 m9 Rocky UG us ea __.Walnu NC 07 -WC 43 r tiharGYiar(J , 0 '/Q rOW7 CC Z� Survey Site ,,- NCNHP Element Occurence Stream L- County Boundary �5�\p\hiEER/* Prepared For: Q nwrq y p e �/7 m � SQO 1#3311OF TPA 'vT n Aquatic Species Survey 17BP.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) NCNHP Element Occurences: Neuse River Waterdog Edgecombe County, North Carolina 64 NC 43 Date: March 2018 scale, 0 0.5 1 Miles 1 r � Job No 17-108 Drawn By. Checked By: KEMS TVVS US 64 NC 1 I' NC 122 22 Figure 2-5 fJ J C 33 US 3+,/�I1 Lari� A& Nc/ pa1k--S us EO ID 1226 1C = _ j NC 4 Sall1/.1 gra Sq - US 3R.4 ll -r son l ID 19769 -� � TP f Bridge #54 o dLNr <_. mp 7 z Rocky,,!�6© r U � -- y% US6d 1 M.La� (' J _ Cat) A survey site f - NCNHP Element Occurence INC Stream `5 -_-� County Boundary \p\ EIRl* Prepared For: . _ �4 I EO ID 11561 - Ai •i t \ G - I EO ID 16882 [ ' J;L4 R,rW3re - NC 33 Ln— US 64 [S� Oic Y'. EO ID 11292 eMrif� ch NC 111 NC 121 Goa Openstr etMap ( nd) contri toff UC-BY-SA Aquatic Species Survey 17BR.4.R.101: Improvements to SR 1243 over Tar River (Bridge #54) NCNHP Element Occurences. Carolina Madtom Edgecombe County, North Carolina Date: March 2018 Scale: 0 0.5 1 Miles I Job No.: 17-108 Drawn By: Checked By: KEMS TWS Figu 2-6 I Batt] �aOro `y r I [ NC 4R NC 43 14' ortthes NC i Survey Site C NPDES Discharge 303(d) Listed Streams Stream ---� County Boundary �Uk��Llff,Ifl Prepared For: CS �4 LLA rn 3u19�� wF x 4 16 ll 5 Y,1, 1 N — I 11 OHM t+ NC 48 4f x US 309 Tar river regional NC d3 WWTP (NCO030317) Crab y r � o r 1 r River hf" le h"gcertrF�'d' T�C NC 43 •L. 1 Nrs s i hC 4N 'L'rvvao Rg4 fff[t@s _._ P So thews[ Rocky Maumt,,• rB Ir G;io+ry _ 1 Bridge #54 •1 ,, bJf a� is+. 0 � n= int 0) f-o -- —_ gUckS`��, �� .3 c� Q NC 77 - �?PJi 43 Co � ��a R■ NC 43 0 1 ic7 OpenSte t �tp { a a },.�`bnfri • 'tors, C 11-SA Aquatic Species Survey 171BPAR.101: Improvements to SR 1243 over Tar River (Bridge #54) 303(d) Listed Streams & NPDES Discharges Edgecombe County, North Carolina Date: March 2018 Scale: 0 0.5 1 Mile- I t Job No.: 17-108 Drawn By: Checked By: KEMS TWS Figu re 3